Liu Lab@NJAU

Shengnan Qiu, Wanqiu Zhang, Yueying Yu, Sujiao Shi, Yunlong Gao, Tao Zhang, Pengchao Zhan, Xue Zhang, Jinxin Liu. Non-pasteurized milk enhances early colonization and persistence of Lactobacillus species in dairy calves promoting a stable hindgut microbiome. Animal Advances,2025[2025-11-03]. doi: 10.48130/animadv-0025-0026

Yijun Tang, Pengchao Zhan, Yingjian Wu, Tao Zhang, Di Yin, Yunlong Gao, Yueying Yu, Shengnan Qiu, Jiaqi Zhao, Xue Zhang, Zhe Ma, Yanting Chen, Liang Zhao, Shengyong Mao, Jinhu Huang, Wei-Hua Chen, Jinxin Liu. Landscape of mobile genetic elements and their functional cargo across the gastrointestinal tract microbiomes in ruminants. Microbiome ,2025[2025-07-12]. doi.org/10.1186/s40168-025-02139-1

Yunlong Gao, Wanqiu Zhang, Tao Zhang, Yueying Yu, Shengyong Mao, Jinxin Liu. Fructo-oligosaccharides supplementation enhances the growth of nursing dairy calves while stimulating the persistence of Bifidobacterium and hindgut microbiome’s maturation. Journal of Dairy Science, 2024[2024-03-22]. doi: 10.3168/jds.2024-24468

Yunlong Gao, Jinxin Liu, Yi Fang, Xinming Xu, Fei Wang, Yijun Tang, Di Yin, Adrian L Cookson, Weiyun Zhu, Shengyong Mao, Rongzhen Zhong. Straw-based compost cultivation disproportionally contributes to the environmental persistence of antibiotic resistance from raw cattle manure to organic vegetables. Microbiological Research, 2023[2023-10-30]. doi: 10.1016/j.micres.2023.127540

Xinming Xu, Qingying Feng, Tao Zhang, Yunlong Gao, Qu Cheng, Wanqiu Zhang, Qinglong Wu, Ke Xu, Yucan Li, Nhu Nguyen, Diana H. Taft, David A. Mills, Danielle G. Lemay, Weiyun Zhu, Shengyong Mao, Anyun Zhang, Kelin Xu, Jinxin Liu. Infant age inversely correlates with gut carriage of resistance genes, reflecting modifications in microbial carbohydrate metabolism during early life. iMeta, 2023[2023-12-06]. doi:10.1002/imt2.169

Tao Zhang, Yingyu Mu, Yunlong Gao, Yijun Tang, Shengyong Mao, Jinxin Liu. Fecal microbial gene transfer contributes to the high-grain diet-induced augmentation of aminoglycoside resistance in dairy cattle. mSystems, 2023[2023-12-12]. doi:10.1128/msystems.00810-23

Yina Huang, Jinxin Liu, Hein Min Tun, Catherine Stanton, Tingtao Chen, Hani El‐Nezami,  Hua Wei, Mingfu Wang,  Qinglong Wu. Gut microbiota insights into human adaption to high‐plateau diet. iMeta, 2022[2022-02-25].  doi:10.1002/imt2.6.

Zunfang Tu, Junrui Shui, Jinxin Liu, Hongmei Tuo, Haoyu Zhang, Cong Lin, Jingyi Feng, Yuxuan Feng, Wen Su, Anyun Zhang*. Exploring the abundance and influencing factors of antimicrobial resistance genes in manure plasmidome from swine farms. Journal of Environmental Sciences, 2023, 124: 462-471. doi : 10.1016/j.jes.2021.11.030.

Tu, Zunfang, Ju Gu, Haoyu Zhang, Jinxin Liu, Junrui Shui, and Anyun Zhang. Withdrawal of Colistin Reduces Incidence of mcr-1-Harboring IncX4-Type Plasmids but Has Limited Effects on Unrelated Antibiotic Resistance. Pathogens 10, no. 8 (2021): 1019.doi: 10.3390/pathogens10081019

Sandeep Kumar, M. Ajmal Khan, Emma Beijer, Jinxin Liu, Katherine K. Lowe, Wayne Young, David A. Mills and Christina D. Moon*. Effect of milk replacer allowance on calf faecal bacterial community profiles and fermentation. Animal Microbiome 3, 27 (2021).doi:10.1186/s42523-021-00088-2

Jinxin Liu , Feng Yu , Douglas R. Call , David A. Mills, Anyun Zhang, Zhe Zhao* (2021). On-farm soil resistome is modified after treating dairy calves with the antibiotic florfenicol. Science of the Total Environment, 141694. doi:10.1016/j.scitotenv.2020.141694 

Jinxin Liu, Yuanting Zhu, Michele Jay-Russell, Danielle G. Lemay and David A. Mills* (2020). Reservoirs of antimicrobial resistance genes in retail raw milk. Microbiome, 8(1).doi:10.1186/s40168-020-00861-6  

Ju Gu#, Xianjun Xie#, Jinxin Liu#,  Junrui Shui, Haoyu Zhang , Ganyu Feng , Xiaoyu Liu , Lincan Li, Qiwei Lan, QiHan Jin, Rui Li, Li Peng, Changwei Lei, Anyun Zhang *(2020). Prevalence and transmission of antimicrobial-resistant Staphylococci and Enterococci from shared bicycles in Chengdu, China. Science of the Total Environment,139735.doi:10.1016/j.scitotenv.2020.139735

Yuanting Zhu, Jinxin Liu,  Julian M. Lopez, and David A. Mills *(2020). Inulin fermentation by lactobacilli and bifidobacteria from dairy calves. Applied and Environmental Microbiology.doi:10.1128/aem.01738-20 

Ju Gu, Yunxia Li, Changwen Xu, Xianjun Xie, Ping Li, Guangxu Ma , Changwei Lei , Jinxin Liu , Anyun Zhang* (2020). Genome sequence of a multidrug-resistant Erysipelothrix rhusiopathiae ZJ carrying several acquired resistance genes. Journal of Global Antimicrobial Resistance.doi:10.1016/j.jgar.2020.02.017 

Jinxin Liu. (2020). Tackling the global non-prescription use of antibiotics. The Lancet Infectious Diseases, 20(2), 169–170.doi:10.1016/s1473-3099(19)30744-3 

Yanxian Yang#, Xianjun Xie#, Mengjun Tang, Jinxin Liu, Hongmei Tuo, Ju Gu, Yizhi Tang, Changwei Lei, Hongning Wang, Anyun Zhang(2019). Exploring the profile of antimicrobial resistance genes harboring by bacteriophage in chicken feces. Science of the Total Environment, 134446.doi:10.1016/j.scitotenv.2019.134446

Dan Liu, Yongqiang Yang, Ju Gu, Hongmei Tuo, Ping Li, Xianjun Xie, Guangxu Ma, Jinxin Liu, Anyun Zhang(2019). The Yersinia high-pathogenicity island (HPI) carried by a new integrative and conjugative element (ICE) in a multidrug-resistant and hypervirulent Klebsiella pneumoniae strain SCsl1. Veterinary Microbiology, 108481.doi:10.1016/j.vetmic.2019.108481

Jinxin Liu , Zhe Zhao, Johannetsy J. Avillan, Douglas R. Call, Margaret Davis, William M. Sischo, Anyun Zhang* (2019). Dairy farm soil presents distinct microbiota and varied prevalence of antibiotic resistance across housing areas. Environmental Pollution, 113058.doi:10.1016/j.envpol.2019.113058 

Jinxin Liu , Diana H. Taft, Maria X. Maldonado-Gomez, Daisy Johnson, Michelle L. Treiber , Danielle G. Lemay , Edward J. DePeters & David A. Mills(2019). The fecal resistome of dairy cattle is associated with diet during nursing. Nature Communications, 10(1).doi:10.1038/s41467-019-12111-x 

Anyun Zhang, Douglas R. Call , Thomas E. Besser , Jinxin Liu , Lisa Jones , Hongning Wang, Margaret A. Davis * (2019). β-lactam resistance genes in bacteriophage and bacterial DNA from wastewater, river water, and irrigation water in Washington State. Water Research.doi:10.1016/j.watres.2019.06.026 

Zhe Zhao#, Jinxin Liu#, Yiqin Deng, Wen Huang, Chunhua Ren, Douglas R. Call & Chaoqun Hu(2018). The Vibrio alginolyticus T3SS effectors, Val1686 and Val1680, induce cell rounding, apoptosis and lysis of fish epithelial cells. Virulence, 9(1), 318–330. doi:10.1080/21505594.2017.1414134 

Diana H. Taft,  Jinxin Liu,  Maria X. Maldonado-Gomez, Samir Akre, M. Nazmul Huda, S. M. Ahmad, Charles B. Stephensen, David A. Mills(2018). Bifidobacterial Dominance of the Gut in Early Life and Acquisition of Antimicrobial Resistance. mSphere, 3(5).doi:10.1128/msphere.00441-18 

Yanxian Yang#,  Wenjin Shi#,  ShaoYeh Lu,  Jinxin Liu, Huihui Liang,  Yifan Yang, Guowei Duan, Yunxia Li, Hongning Wang , Anyun Zhang*(2018). Prevalence of antibiotic resistance genes in bacteriophage DNA fraction from Funan River water in Sichuan, China. Science of the Total Environment, 626, 835–841.doi:10.1016/j.scitotenv.2018.01.148 

Jinxin Liu, Yanxian Yang, Yunxia Li, Dan Liu, Hongmei Tuo, Hongning Wang, Douglas R. Call, Margaret Davis, Anyun Zhang (2018). Isolation of an IncP-1 plasmid harbouring mcr-1 from a chicken isolate of Citrobacter braakii in China. International Journal of Antimicrobial Agents, 51(6), 936–940.doi:10.1016/j.ijantimicag.2017.12.030 

Shao-Yeh Lu, Zhe Zhao, Johannetsy J. Avillan, Jinxin Liu and Douglas R. Call* (2017). Autoinducer-2 Quorum Sensing Contributes to Regulation of Microcin PDI in Escherichia coli. Frontiers in Microbiology, 8.doi:10.3389/fmicb.2017.02570 

Jinxin Liu, Zhe Zhao*, Yiqing Deng, Yan Shi, Yupeng Liu, Chao Wu, Peng Luo and Chaoqun Hu (2017). Complete Genome Sequence of Vibrio campbellii LMB 29 Isolated from Red Drum with Four Native Megaplasmids. Frontiers in Microbiology, 8.doi:10.3389/fmicb.2017.02035 

Zhe Zhao, Lisa H. Orfe, Jinxin Liu, Shao-Yeh Lu, Thomas E. Besser & Douglas R. Call (2017). Microcin PDI regulation and proteolytic cleavage are unique among known microcins. Scientific Reports, 7(1).doi:10.1038/srep42529 

Jinxin Liu, Shao-Yeh Lu, Lisa H. Orfe, Chunhua Ren, Chaoqun Hu, Douglas R. Call , Johannetsy J. Avillan and Zhe Zhao* (2016). ExsE Is a Negative Regulator for T3SS Gene Expression in Vibrio alginolyticus. Frontiers in Cellular and Infection Microbiology, 6.doi:10.3389/fcimb.2016.00177 

Yongqiang Yang#, Anyun Zhang#, Suzhen Ma, Linghan Kong, Yunxia Li, Jinxin Liu, Margaret A. Davis, Xinyi Guo, Bihui Liu, Changwei Lei and Hongning Wang*(2016). Co-occurrence ofmcr-1and ESBL on a single plasmid inSalmonella enterica. Journal of Antimicrobial Chemotherapy, 71(8), 2336–2338.doi:10.1093/jac/dkw243 

 Jinxin Liu, Zhe Zhao, Lisa Orfe, Murugan Subbiah and Douglas R. Call *(2015). Soil-borne reservoirs of antibiotic-resistant bacteria are established following therapeutic treatment of dairy calves. Environmental Microbiology, 18(2), 557–564.doi:10.1111/1462-2920.13097 

Caitlin P. Youngquist*,  Jinxin Liu, Lisa H. Orfe, Stephen S. Jones, a Douglas R. Call. (2014). Ciprofloxacin Residues in Municipal Biosolid Compost Do Not Selectively Enrich Populations of Resistant Bacteria. Applied and Environmental Microbiology, 80(24), 7521–7526. doi:10.1128/aem.02899-14 

Douglas R. Call*, Louise Matthews, Murugan Subbiah and Jinxin Liu (2013). Do antibiotic residues in soils play a role in amplification and transmission of antibiotic resistant bacteria in cattle populations? Frontiers in Microbiology, 4.doi:10.3389/fmicb.2013.00193